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Port details
bamtools API and toolkit for handling BAM files
2.5.1 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 28 Mar 2018 13:26:48
License: MIT
BamTools provides both a programmer's API and an end-user's toolkit for
handling BAM files.

WWW: https://github.com/pezmaster31/bamtools
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (29 items)
  1. /usr/local/share/licenses/bamtools-2.5.1/catalog.mk
  2. /usr/local/share/licenses/bamtools-2.5.1/LICENSE
  3. /usr/local/share/licenses/bamtools-2.5.1/MIT
  4. bin/bamtools
  5. include/bamtools/api/BamAlgorithms.h
  6. include/bamtools/api/BamAlignment.h
  7. include/bamtools/api/BamAux.h
  8. include/bamtools/api/BamConstants.h
  9. include/bamtools/api/BamIndex.h
  10. include/bamtools/api/BamMultiReader.h
  11. include/bamtools/api/BamReader.h
  12. include/bamtools/api/BamWriter.h
  13. include/bamtools/api/IBamIODevice.h
  14. include/bamtools/api/SamConstants.h
  15. include/bamtools/api/SamHeader.h
  16. include/bamtools/api/SamProgram.h
  17. include/bamtools/api/SamProgramChain.h
  18. include/bamtools/api/SamReadGroup.h
  19. include/bamtools/api/SamReadGroupDictionary.h
  20. include/bamtools/api/SamSequence.h
  21. include/bamtools/api/SamSequenceDictionary.h
  22. include/bamtools/api/algorithms/Sort.h
  23. include/bamtools/api/api_global.h
  24. include/bamtools/shared/bamtools_global.h
  25. lib/libbamtools.so
  26. lib/libbamtools.so.2.5.1
  27. libdata/pkgconfig/bamtools-1.pc
  28. @postexec /sbin/ldconfig -m /usr/local/lib
  29. @postunexec /sbin/ldconfig -R
  30. Collapse this list.

To install the port: cd /usr/ports/biology/bamtools/ && make install clean
To add the package: pkg install bamtools

PKGNAME: bamtools

distinfo:

TIMESTAMP = 1520126058
SHA256 (pezmaster31-bamtools-v2.5.1_GH0.tar.gz) = 4abd76cbe1ca89d51abc26bf43a92359e5677f34a8258b901a01f38c897873fc
SIZE (pezmaster31-bamtools-v2.5.1_GH0.tar.gz) = 549750


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. cmake : devel/cmake
  2. ninja : devel/ninja
Library dependencies:
  1. libjsoncpp.so : devel/jsoncpp

This port is required by:

for Run * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...
Configuration Options
     No options to configure

USES:
cmake:outsource

Master Sites:
  1. https://codeload.github.com/pezmaster31/bamtools/tar.gz/v2.5.1?dummy=/

Number of commits found: 1

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
28 Mar 2018 13:26:31
Original commit files touched by this commit  2.5.1
Revision:465808
jwb search for other commits by this committer
biology/bamtools: API and toolkit for handling BAM files

Approved by:    jrm
Differential Revision:  https://reviews.freebsd.org/D14877

Number of commits found: 1

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