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Port details
bwa Burrows-Wheeler sequence aligner
0.7.17 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 25 Sep 2015 18:39:48
License: GPLv3
BWA is a program for aligning sequencing reads against a large reference
genome (e.g. human genome). It has two major components, one for read shorter
than 150bp and the other for longer reads.

WWW: https://sourceforge.net/projects/bio-bwa/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (7 items)
  1. bin/bwa
  2. bin/qualfa2fq.pl
  3. bin/xa2multi.pl
  4. man/man1/bwa.1.gz
  5. /usr/local/share/licenses/bwa-0.7.17/catalog.mk
  6. /usr/local/share/licenses/bwa-0.7.17/LICENSE
  7. /usr/local/share/licenses/bwa-0.7.17/GPLv3
  8. Collapse this list.

To install the port: cd /usr/ports/biology/bwa/ && make install clean
To add the package: pkg install bwa

PKGNAME: bwa

distinfo:

TIMESTAMP = 1511844744
SHA256 (lh3-bwa-v0.7.17_GH0.tar.gz) = 980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd
SIZE (lh3-bwa-v0.7.17_GH0.tar.gz) = 232593


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Build dependencies:
  1. gmake : devel/gmake
Runtime dependencies:
  1. perl5>=5.24<5.25 : lang/perl5.24

This port is required by:

for Run * - deleted ports are only shown under the This port is required by section. It was harder to do for the Required section. Perhaps later...
Configuration Options
     No options to configure

USES:
gmake perl5 shebangfix tar:bzip2

Master Sites:
  1. https://codeload.github.com/lh3/bwa/tar.gz/v0.7.17?dummy=/

Number of commits found: 12

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
31 Jan 2018 01:07:08
Original commit files touched by this commit  0.7.17
Revision:460452
jwb search for other commits by this committer
Multiple ports:
Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org
Remove Created by comments for same user

Approved by: jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D14128
01 Dec 2017 02:42:54
Original commit files touched by this commit  0.7.17
Revision:455246
jwb search for other commits by this committer
[unbreak] biology/bwa: Remove old patch files

Approved by: jrm
Differential Revision:  https://reviews.freebsd.org/D13314
30 Nov 2017 06:13:35
Original commit files touched by this commit  0.7.17
Revision:455167  Sanity Test Failure
linimon search for other commits by this committer
For ports that are marked BROKEN on armv6, and also fail to build on
armv7, mark them so.

This is part two of a multipart commit to bring armv7 ports to parity
with armv6.

Approved by:	portmgr (tier-2 blanket)
Obtained from:	lonesome.com -exp run
28 Nov 2017 15:21:01
Original commit files touched by this commit  0.7.17
Revision:455045
jwb search for other commits by this committer
biology/bwa: Upgrade to 0.7.17

Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D13283
26 May 2017 20:02:44
Original commit files touched by this commit  0.7.9a
Revision:441814
linimon search for other commits by this committer
Mark some ports failing on armv6, for errors classified as "???".

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
13 May 2017 03:35:51
Original commit files touched by this commit  0.7.9a
Revision:440746
linimon search for other commits by this committer
Mark some ports failing on power64.  In cases where the error message
was a stub, provide a real one.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
31 Jan 2017 03:40:46
Original commit files touched by this commit  0.7.9a
Revision:432897
linimon search for other commits by this committer
Mark various ports broken on aarch64 and armv6.

Approved by:	portmgr (tier-2 blanket)
20 Jan 2017 20:33:31
Original commit files touched by this commit  0.7.9a
Revision:431996
sunpoet search for other commits by this committer
Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/
11 Nov 2016 09:07:21
Original commit files touched by this commit  0.7.9a
Revision:425878
linimon search for other commits by this committer
Attempt to fix build on non-x86 archs.

Approved by:	portmgr (tier-2 blanket)
13 Dec 2015 16:07:28
Original commit files touched by this commit  0.7.9a
Revision:403676
swills search for other commits by this committer
mark some of the ports that don't build on powerpc64 for me
11 Dec 2015 08:48:57
Original commit files touched by this commit  0.7.9a
Revision:403506
miwi search for other commits by this committer
- Update maintainer mail address
- Update/Remove MASTER_SITE

PR:		204755
Submitted by:	 jwbacon@tds.net (maintainer)
Approved by:	mat (mentor)
Differential Revision:	D4493
25 Sep 2015 18:39:37
Original commit files touched by this commit  0.7.9a
Revision:397851
rm search for other commits by this committer
BWA is a program for aligning sequencing reads against a large reference
genome (e.g. human genome). It has two major components, one for read shorter
than 150bp and the other for longer reads.

WWW: http://sourceforge.net/projects/bio-bwa/

PR:		203158
Submitted by:	Jason Bacon <jwbacon@tds.net>

Number of commits found: 12

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