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Port details
clustal-omega Multiple alignment of nucleic acid and protein, replaces clustalw
1.2.4 biology on this many watch lists=0 search for ports that depend on this port Find issues related to this port Report an issue related to this port
Maintainer: jwb@FreeBSD.org search for ports maintained by this maintainer
Port Added: 21 May 2018 22:15:40
License: GPLv2
Clustal Omega is the latest addition to the Clustal family. It offers a
significant increase in scalability over previous versions, allowing hundreds
of thousands of sequences to be aligned in only a few hours. It will also make
use of multiple processors, where present. In addition, the quality of
alignments is superior to previous versions, as measured by a range of popular
benchmarks.

WWW: http://www.clustal.org/omega/
SVNWeb : Homepage : PortsMon
    Pseudo-pkg-plist information, but much better, from make generate-plist
    Expand this list (35 items)
  1. /usr/local/share/licenses/clustal-omega-1.2.4/catalog.mk
  2. /usr/local/share/licenses/clustal-omega-1.2.4/LICENSE
  3. /usr/local/share/licenses/clustal-omega-1.2.4/GPLv2
  4. bin/clustalo
  5. include/clustalo/clustal-omega-config.h
  6. include/clustalo/clustal-omega.h
  7. include/clustalo/clustal/hhalign_wrapper.h
  8. include/clustalo/clustal/ktuple_pair.h
  9. include/clustalo/clustal/log.h
  10. include/clustalo/clustal/mbed.h
  11. include/clustalo/clustal/muscle_tree.h
  12. include/clustalo/clustal/pair_dist.h
  13. include/clustalo/clustal/progress.h
  14. include/clustalo/clustal/seq.h
  15. include/clustalo/clustal/symmatrix.h
  16. include/clustalo/clustal/tree.h
  17. include/clustalo/clustal/util.h
  18. include/clustalo/clustal/weights.h
  19. include/clustalo/hhalign/general.h
  20. include/clustalo/hhalign/hhfunc.h
  21. include/clustalo/squid/gki.h
  22. include/clustalo/squid/gsi64.h
  23. include/clustalo/squid/msa.h
  24. include/clustalo/squid/rk.h
  25. include/clustalo/squid/sqfuncs.h
  26. include/clustalo/squid/squid.h
  27. include/clustalo/squid/sre_random.h
  28. include/clustalo/squid/ssi.h
  29. include/clustalo/squid/stockholm.h
  30. include/clustalo/squid/stopwatch.h
  31. include/clustalo/squid/vectorops.h
  32. include/clustalo/squid/version.h
  33. lib/libclustalo.a
  34. libdata/pkgconfig/clustalo.pc
  35. share/doc/clustal-omega/README
  36. Collapse this list.

To install the port: cd /usr/ports/biology/clustal-omega/ && make install clean
To add the package: pkg install clustal-omega

PKGNAME: clustal-omega

distinfo:

TIMESTAMP = 1526846209
SHA256 (clustal-omega-1.2.4.tar.gz) = 8683d2286d663a46412c12a0c789e755e7fd77088fb3bc0342bb71667f05a3ee
SIZE (clustal-omega-1.2.4.tar.gz) = 1170516


NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.

Library dependencies:
  1. libargtable2.so : devel/argtable
There are no ports dependent upon this port

Configuration Options
     No options to configure

USES:
libtool localbase

Master Sites:
  1. http://www.clustal.org/omega/

Number of commits found: 1

Commit History - (may be incomplete: see SVNWeb link above for full details)
DateByDescription
21 May 2018 22:15:26
Original commit files touched by this commit  1.2.4
Revision:470582
jwb search for other commits by this committer
biology/clustal-omega: Multiple alignment of nucleic acid and protein, replaces
clustalw

Approved by:    jrm
Differential Revision:  https://reviews.freebsd.org/D15516

Number of commits found: 1

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