Port Added: 06 Jun 2018 15:15:33
Infernal, standing for "INFERence of RNA ALignment", is a tool for searching
DNA sequence database for RNA structure and sequence similarities.
It is based on Covariance Model (CM), which scores a combination of sequence
consensus and RNA secondary structure consensus, and thus is more capable of
identifying RNA homologs than using primary sequence profile.
The Rfam database of RNA families is based on Infernal.
Nawrocki & Eddy (2013) Infernal 1.1: 100-fold faster RNA homology searches,
Bioinformatics 29: 2933-2935.
WWW: http://eddylab.org/infernal/SVNWeb : Homepage : PortsMon
Pseudo-pkg-plist information, but much better, from
To install the port:
cd /usr/ports/biology/infernal/ && make install clean
To add the package:
pkg install infernal
ONLY_FOR_ARCHS: amd64 i386
TIMESTAMP = 1528251928
SHA256 (infernal-1.1.2.tar.gz) = ac8c24f484205cfb7124c38d6dc638a28f2b9035b9433efec5dc753c7e84226b
SIZE (infernal-1.1.2.tar.gz) = 19364073
NOTE: FreshPorts displays only information on required and default dependencies. Optional dependencies are not covered.Build dependencies:
- gmake : devel/gmake
This port is required by:for Run
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===> The following configuration options are available for infernal-1.1.2:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
TEST=off: Build and/or run tests
===> Use 'make config' to modify these settings